Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340410: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-146556' containing sample 'Escherichia coli HVH 210 (4-3042480)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 2.9M spots, 585.7M bases, 332.2Mb downloads

UUID: 63d048d5-9980-4cc1-9209-2eb0db845def

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186237 • SRP019170 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 210 (4-3042480)

SAMN01885849 • SRS399717 • All experiments • All runs

Organism: Escherichia coli HVH 210 (4-3042480)

Library:

Name: Solexa-146556

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 294980.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:3YT9V

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30171

research_project: RP-192

root_sample_id: SM-2TD2W

sample_id: SM-3YT9V

work_request: 35511

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-09 06:21:59.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 2.9M spots, 585.7M bases, 332.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR958406	1,464,017	295.7M	169.9Mb	2013-08-28
SRR958407	1,435,556	290M	162.3Mb	2013-08-28

ID:: 478194

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